The automaker's plants and production lines in Japan are scheduled to operate normally for the first time in seven months.
The sweeping shutdowns, which begin in August and run through the end of September, will hammer Toyota output in every major market -- Japan, the U.S., Europe, China and Asia.
Toyota had been aiming for a high February production plan to meet strong demand.
The automaker said parts such as semiconductors and wire harnesses are in short supply because of bottlenecks triggered by lockdowns in southeast Asia.
The automaker will reduce output again in November, but the impact will not be as painful as before and Toyota sees signs of recovery on the horizon.
The three-day suspension is likely to mean a production fall of 3,500 vehicles.
The automaker has asked suppliers to make up for lost output so it can build an additional 97,000 vehicles between December and the end of March, Reuters reported.
The comment comes after the automaker said a parts shortages would cost it 14,000 vehicles in lost production in December.
The quake triggered a tsunami, caused blackouts as far away as Tokyo, derailed the country's famed bullet train and buckled highways that serve as critical supply arteries.
The latest stoppages will bring lost output to 9,000 vehicles, the automaker said, and affect production of Lexus models and the Land Cruiser.
The attack comes just after Japan joined Western allies in clamping down on Russia due to its invasion of Ukraine.
Toyota said it would slash its global production plan for April by 150,000 units to 750,000 vehicles, compared with the original schedule reported to suppliers earlier this year.
The planned four-day halt to production at a Tsutsumi factory line, which makes Camry and Corolla models, will cut vehicle output by as many as 1,500 vehicles.
Toyota's overseas output climbed 5.6 percent to 3.35 million vehicles through June, while production in Japan fell 18 percent to 1.73 million.
The latest January suspensions hit 19 lines at 11 plants in Japan, out of a total of 28 lines in 14 plants.
The stoppages affect output of Lexus models and the Toyota Land Cruiser as the automaker runs short of components from plants in Southeast Asia where production has been disrupted.
Production lines will be switched back on at its 14 factories across the country, Toyota said.
Toyota said heavy rains, especially in its home prefecture of Aichi in central Japan, impacted procurement of parts and will force it to stop production at a total of three lines in two domestic factories.
Toyota's global production plan for June stands at about 850,000 vehicles, a cut of about 100,000 vehicles.
The automaker will suspend production on three lines at its Motomachi plant in September. That follows suspensions at its Tsutsumi plant.
The automaker this month will suspend output at all but one plant in North America — putting more pressure on dealers with historically low inventories.
Toyota President Akio Toyoda told union members in Japan that suppliers would be exhausted unless there was a "sound" production plan.
Toyota said there was "a possibility" that it could lower its full-year production plan of 9.7 million vehicles as it faces a continuing shortage of parts due to the COVID-19 lockdowns in China.
Toyota is reviewing its production plans as mounting global disruptions hinder its attempts to raise output.
Toyota could lose up to 480,000 units from January through March.