The three-day suspension is likely to mean a production fall of 3,500 vehicles.
The automaker has asked suppliers to make up for lost output so it can build an additional 97,000 vehicles between December and the end of March, Reuters reported.
The comment comes after the automaker said a parts shortages would cost it 14,000 vehicles in lost production in December.
The latest stoppages will bring lost output to 9,000 vehicles, the automaker said, and affect production of Lexus models and the Land Cruiser.
Toyota said domestic production fell in July, outweighing record overseas production that was driven by a strong recovery in Europe, China and the rest of Asia.
The planned four-day halt to production at a Tsutsumi factory line, which makes Camry and Corolla models, will cut vehicle output by as many as 1,500 vehicles.
The latest January suspensions hit 19 lines at 11 plants in Japan, out of a total of 28 lines in 14 plants.
The Nissan Z car, a 400-hp, twin-turbo symbol of the struggling Japanese automaker's revival, is the latest product launch to be derailed by global supply chain woes.
The stoppages affect output of Lexus models and the Toyota Land Cruiser as the automaker runs short of components from plants in Southeast Asia where production has been disrupted.
Plants that build the Civic, CR-V, Honda e, Jazz/Fit and HR-V will be affected by output cuts.
Toyota said heavy rains, especially in its home prefecture of Aichi in central Japan, impacted procurement of parts and will force it to stop production at a total of three lines in two domestic factories.
The production upgrades at the Hofu H2 assembly plant in western Japan will underpin upcoming production of new vehicles.
Toyota's global production plan for June stands at about 850,000 vehicles, a cut of about 100,000 vehicles.
Mazda will suspend production at its two domestic factories for two days in April as factors including a rise in COVID-19 cases in China cause supply disruptions.
EV production should account for about 40 to 50 percent of Honda's total output in North America in 2030, or around 800,000 battery-electric vehicles.
Toyota President Akio Toyoda told union members in Japan that suppliers would be exhausted unless there was a "sound" production plan.
Toyota said there was "a possibility" that it could lower its full-year production plan of 9.7 million vehicles as it faces a continuing shortage of parts due to the COVID-19 lockdowns in China.
A key innovation is a new powertrain assembly technique called SUMO, short for simultaneous underfloor mounting operation. It foreshadows Nissan’s approach to next-gen EV production.
Plant shutdowns have translated into lost wages for tens of thousands of workers across Mexico due to furloughs and layoffs.
The industry is settling into the new year acknowledging that it's not out of the woods yet on chip shortage disruptions.